PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART01G00850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 287aa MW: 29975.7 Da PI: 7.834 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1.1e-09 | 204 | 247 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ + RR+ri +++ L++l+P+ +K++ +++LekA++Y+k Lq OBART01G00850.1 204 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 247 67799*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-14 | 195 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.39E-12 | 197 | 251 | No hit | No description |
PROSITE profile | PS50888 | 14.983 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-12 | 198 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 204 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MMAAQASSKR GMLLPREAVL YDDEPSMPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS 60 SSSVLSFDQA AVGGGGCARQ LAFHPGGDDD DCAMWMDAAA GAMVENTSVV AGGGNNYCHR 120 LQFHGGAAGF GLASPGSSVV DNGLEIHESN VSKPPPPAAK KRACPSGEAR AAGKKQCRKG 180 SKPNKAASAS SPSPSPNKEQ PQSAAAKVRR ERISERLKVL QDLVPNGTKV DLVTMLEKAI 240 NYVKFLQLQV KVLATDEFWP AQGGKAPELS QVKDALDAIL SSQHPNK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108587 | 0.0 | AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence. | |||
GenBank | HQ858858 | 0.0 | HQ858858.1 Oryza sativa Japonica Group isolate UT1665 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643698.1 | 1e-176 | transcription factor bHLH83 | ||||
TrEMBL | A0A0D3EIU1 | 0.0 | A0A0D3EIU1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NJN4 | 0.0 | I1NJN4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0007400.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G00850.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-46 | ROOT HAIR DEFECTIVE6 |