PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009631882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 361aa MW: 41351.3 Da PI: 9.7125 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.1e-05 | 119 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L++H + H XP_009631882.1 119 YLCRVCGRRFYTNEKLVNHFKQiH 142 56*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.7E-7 | 64 | 118 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 1.37E-5 | 115 | 145 | No hit | No description |
PROSITE profile | PS50157 | 11.884 | 119 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 119 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 121 | 142 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 9.68E-14 | 136 | 271 | No hit | No description |
Pfam | PF01936 | 5.2E-8 | 191 | 273 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 1.7E-7 | 204 | 259 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MLKRVKASTF IHAIRSYKRF CHFESKSNLG FGSLDSSVRT NVGIFWDLDN KPPKSFPPFD 60 AATKLKKAAG EFGVVRYTVA YANRHAFSYV PPLVRQQRKE RKTLNSLEKS GVVKVEEPYL 120 CRVCGRRFYT NEKLVNHFKQ IHEREHTKRL NQIESARGKM RVKLVAKYAM KMDKYKNAVR 180 DVLTPKVGYG LADELKRAGF WVRTVSDKPQ AADVALRNHL VDVMDKRMVE CVVLVSDDSD 240 FVEVLKEARL RCLKTVVVGD CNDGALKRTA DASFSWQEII MGKAKKEAVS VVGRWKDRDV 300 LKRLEWTYDP EVEKKQYYSE VESDDSDGLF SGEDDNKDDD ASISKEDACA WWKLDSRSGH 360 G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018622181.1 | 0.0 | PREDICTED: uncharacterized protein LOC104121552 | ||||
TrEMBL | A0A1S3Y5R0 | 0.0 | A0A1S3Y5R0_TOBAC; uncharacterized protein LOC107772620 | ||||
STRING | XP_009631868.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-151 | C2H2 family protein |