PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631001.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 257aa    MW: 30098.4 Da    PI: 10.4494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.4e-15137237195
                     EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k+lt +dv   g+l +p kfa+ +          +g ++++++l++ d+ g  We+k    k +++y++++ Wk+ v +++Lk+gD+++++l+
  XP_009631001.1 137 FEKALTEKDVQ--GMLLIPAKFARYFpsfdktisrtNGHTRRDVELQFFDPGGTFWEIKW--VKDRSQYFFSGKWKDIVAEHELKSGDVIIIELS 227
                     88999888887..569*******666********9988889*******************..999999*************************** PP

                     SSSEE..EEE CS
              B3  86 grsefelvvk 95 
                     +++ f  ++k
  XP_009631001.1 228 HDKHFPIRFK 237
                     9999976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.362135240IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17135234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-17135234IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-12137237IPR003340B3 DNA binding domain
SMARTSM010192.1E-10137240IPR003340B3 DNA binding domain
CDDcd100173.37E-13137238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRKKSKVDVQ EKAQAKPTSY TGSRKQNLMA PTEATNEANS YTFLGHKNVK RRKNINPYYN  60
GDRNMLMYRN SFYVQGREQV MIRDNLMIEN KESVTDAANY SKSSKGSGIK NSFKQMMMRI  120
INRGKPAKEE GRVYSVFEKA LTEKDVQGML LIPAKFARYF PSFDKTISRT NGHTRRDVEL  180
QFFDPGGTFW EIKWVKDRSQ YFFSGKWKDI VAEHELKSGD VIIIELSHDK HFPIRFKKQR  240
NILVWEQQVV KESESTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652KNVKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631001.10.0PREDICTED: uncharacterized protein LOC104120850
TrEMBLA0A1S4DBN80.0A0A1S4DBN8_TOBAC; uncharacterized protein LOC107828029
STRINGXP_009631001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1700945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.14e-07RAV family protein