PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009630412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 156aa MW: 17771 Da PI: 4.6709 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.3e-11 | 48 | 130 | 6 | 95 |
..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 t+ v + ++lp+k +e gg + + ++W++ + y++++ +++ Wk+Fv++n+Lk+gD +vF+l+ + s+ +++v+ XP_009630412.1 48 TKTTVKPHYGMYLPRKMNKELpaGGA------PAVLTCGRKKWDMFY-YSNNK----FSAEWKKFVDDNDLKVGDGLVFELSeCStSKIHFRVQ 130 55666677778888888777754333......34556788****999.77777....8999*******************98433344445555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-12 | 39 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-15 | 39 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.32 | 43 | 135 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-14 | 46 | 133 | No hit | No description |
Pfam | PF02362 | 3.4E-8 | 47 | 129 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-5 | 47 | 135 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MESKPSFVHV SNHEDYSTPE RESTGIEEID NGEYWPLSGK PYVDMILTKT TVKPHYGMYL 60 PRKMNKELPA GGAPAVLTCG RKKWDMFYYS NNKFSAEWKK FVDDNDLKVG DGLVFELSEC 120 STSKIHFRVQ ILRGDFPSEL LPEDEEGATD ANPIEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630412.1 | 1e-114 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_016515131.1 | 1e-114 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A1S4DNX0 | 1e-113 | A0A1S4DNX0_TOBAC; B3 domain-containing protein Os04g0386900-like | ||||
STRING | XP_009630412.1 | 1e-114 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1819 | 21 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-07 | B3 family protein |