PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630404.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 368aa    MW: 41289.5 Da    PI: 6.5281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.1e-29195251459
                     SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++WrKYGqK++kgs+fpr+YYrC+++ +C ++k++e+s +dp+++++ Y+geHnh+
  XP_009630404.1 195 TWAWRKYGQKPIKGSPFPRNYYRCSTSkDCDARKHIEKSLRDPNLFIVAYSGEHNHP 251
                     699*********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28178253IPR003657WRKY domain
PROSITE profilePS5081130.733187253IPR003657WRKY domain
SuperFamilySSF1182908.63E-24190253IPR003657WRKY domain
SMARTSM007745.4E-31191252IPR003657WRKY domain
PfamPF031065.3E-23196251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGDNNWDLGA VVRSCNIRPS HDTNKVEVPS LGLESLTFEK DDDWNFFHSL LDDDRDDDIM  60
TFEGLADIFS RDDQKPDAPQ PSFISVPPIA DEVKNVQNYQ QPLLQPIQLP AQQTQPIPPP  120
PPPPPAAAAA AVAAEAAPQQ VIPQQQNLRP VLKRAKVRPT ITVPIRNPII QIRRRKNQPE  180
KTVHEVRQEE LIDFTWAWRK YGQKPIKGSP FPRNYYRCST SKDCDARKHI EKSLRDPNLF  240
IVAYSGEHNH PPPANRCSLS DSTNSKPKSK KLPKGINIVP RRSLSFNSSS SNGSGSSPIS  300
PNTPPVFEIE SATPNKNEMV VEEKKAGNEE EEKVILIPNN FMTEDIIKSF EELKGITTAD  360
EFSKSSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-17183254878Probable WRKY transcription factor 4
2lex_A2e-17183254878Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630404.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A1S4B6030.0A0A1S4B603_TOBAC; probable WRKY transcription factor 27
STRINGXP_009630404.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-33WRKY family protein