PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009629784.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 659aa    MW: 72782.8 Da    PI: 9.0826
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009629784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07560609147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_009629784.1 560 RRPFSVYEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 609
                      567888899*****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.51E-10361452IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.902.4E-4364437No hitNo description
PROSITE profilePS5129414.583555614IPR017930Myb domain
SMARTSM007172.0E-6559612IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-10560610IPR009057Homeodomain-like
SuperFamilySSF466892.05E-15561642IPR009057Homeodomain-like
CDDcd116601.34E-16561611No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MVLHKRLDYG FNGYQVPPIP RATRSARGRG NIRKKSDGNE MCAFDLLTTV AGKLLLEGES  60
TPNSTKTVKE DEDTSLKEKF YNEGIRERGF FISPIVSEAP VVNHCLSKSK DTLSGPASVI  120
TSSDCSEKLD SAEQFINCES KNETGNCSTR AEHEASGSGD FSSCTLGAES KKHMKIDVSN  180
NAKIFSSEFL DLWDRKPTNL VASDNTVKLS LSTDPDPFGS FPVIRNDVKL ATKDDDENSC  240
GCAQPSTRNK AFRPTPRVGD FRMRKLRDVN PKFEYKGHVN VDSETGHAYQ NRSQRDFPFK  300
KRKLYYCNSF SNSDGGSSDR ICSSPTKDIN RDAAGYSLAS SGACAVAGTS ISRGARSSFR  360
SSDSHVKLKI KSFRVPELFV EIPENATVGS LKRTVMEAVT AILGGGLHIG VIFQGKKVRD  420
DNKTLLQAGI SHDDKLDALG FTLEPKHSRA SSTLGPESHS HVLPCDTPQP LTRGPPTPAV  480
ICNGIRQGTY NAFSDHPETN LSNFIESDHD SAPSPPDASL EKDAADSRAL VPVAAVNAEA  540
LDVVPMRKPK RSETAQRRIR RPFSVYEVEA LVQAVEKLGT GRWRDVKMRA FDNAKHRTYV  600
DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLIAHAYW SQKQAKQHMK HQSETRLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-565476504107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293302QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-102HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629784.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_009629792.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A1J6JID70.0A0A1J6JID7_NICAT; Telomere repeat-binding protein 5
STRINGXP_009629784.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-147TRF-like 2