PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009629451.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 201aa MW: 22865.7 Da PI: 7.0328

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009629451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.6e-33	2	55	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ XP_009629451.1 2 PRLRWTQNLHRSFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 55 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-30	1	57	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.916	1	58	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.6E-24	2	56	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.61E-15	2	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	3	54	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MPRLRWTQNL HRSFVHAVER LGGEDRATPK MVLQLMDVKG LTISHVKSHL QMYRSMKHEQ 60 MIQAEAEAAN GSKRNRMDGR EQMNYHQYYN INGKVLFEAH SSPTILPPWK HMQETKENKI 120 MGLEGKSNHY TMFWDFFNGC SVQDNGNGNK VVRDASSLSN KSPSASIIET AEEEDFSSST 180 MSLEPSASFD VNNLSLELTL A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-18	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629451.1	1e-151	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A1S3YNK6	1e-116	A0A1S3YNK6_TOBAC; putative two-component response regulator ARR13
STRING	XP_009629451.1	1e-151	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-27	G2-like family protein