PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23178.2 Da PI: 7.7537 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.8 | 4.4e-39 | 28 | 128 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v++i++lqqq+ +l+ael XP_009628901.1 28 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPIYGCVAHIFTLQQQVVTLQAEL 122 7***********************9989******************************************************************* PP DUF260 95 allkee 100 a+++++ XP_009628901.1 123 AYVQAR 128 **9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.744 | 27 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 28 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MNGGCGGADR EYNNNNNNNV VGGGGGGPCG ACKFLRRKCV RGCIFAPYFD SDQGTAHFAA 60 VHKVFGASNA SKLLLRIPAH KRLDAVVTLC YEALARVRDP IYGCVAHIFT LQQQVVTLQA 120 ELAYVQARLS TLPHLPMRQS PITPTGLQSS SDIFCTTSSI SSSSNNMEYP QFDITAGLSD 180 SFDEQELENF ELHTLARELV SRHLPGVRFR PSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-37 | 24 | 122 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-37 | 24 | 122 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628901.1 | 1e-159 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O81322 | 3e-64 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A1S4AC56 | 1e-157 | A0A1S4AC56_TOBAC; LOB domain-containing protein 19-like | ||||
STRING | XP_009628901.1 | 1e-158 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-62 | LOB domain-containing protein 19 |