PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628596.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 297aa    MW: 33601 Da    PI: 6.7899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628596.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.93.5e-22108169159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgynWrKYGq+ + g+++prsYY+C+++   +C+++k ++rs++dp v++it +g H+++
  XP_009628596.1 108 LDDGYNWRKYGQRYIVGAKYPRSYYQCAHRykqNCEATKYIQRSDDDPYVFKITCKGYHTCQ 169
                     59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-22103170IPR003657WRKY domain
PROSITE profilePS5081120.323103166IPR003657WRKY domain
SuperFamilySSF1182909.68E-22107170IPR003657WRKY domain
SMARTSM007742.0E-25108170IPR003657WRKY domain
PfamPF031063.3E-20109169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDYGFNLDYN SLINELTQGM EHTKKLKAYF NSVTSTSEAT PQLLLQKILS SYEQSLLLLK  60
WSGSAVQSPQ PLPPTSDGMN KRSFNDQSEL IDISKRRFIR EGGSESSLDD GYNWRKYGQR  120
YIVGAKYPRS YYQCAHRYKQ NCEATKYIQR SDDDPYVFKI TCKGYHTCQQ ATTSVLQPTF  180
SLTDRNQHFQ NSHSDDKLIG ASFVSPTTPE SNYFSVSNSS QMNGFGIVHN LQHSESYLSD  240
IGIFLNLHHS DSDRTDIFSA NTSTTSSSVG AEFTGSLGAR FDFSIWTKTT NTLQKDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-17107169769OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628596.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1S3YNK81e-165A0A1S3YNK8_TOBAC; probable WRKY transcription factor 53 isoform X1
STRINGXP_009628596.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.19e-31WRKY DNA-binding protein 30