PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628595.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 176aa MW: 20148.6 Da PI: 8.927 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 51.7 | 1.7e-16 | 135 | 176 | 2 | 40 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver 40 dDgy+WrKYGqK+ g+++prsYY+C+++ +C+++k ++r XP_009628595.1 135 DDGYSWRKYGQKDTFGAKYPRSYYQCAHRykqNCEATKYIQR 176 8***************************9999*******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-17 | 126 | 176 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.35 | 129 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-15 | 132 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-11 | 134 | 176 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-14 | 135 | 176 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MDFSINPEYN SLINELTQGM EHTKQLRAYL RTVPSTSETT QEVLLQKIIY SYEQSLLILK 60 WSGSTPKSSL PLPPTIGAIE SPSFANGSPK SDDMKRSFIH HPELIDNSKR SKKSQPIWSE 120 EVRVSAESGS EGPIDDGYSW RKYGQKDTFG AKYPRSYYQC AHRYKQNCEA TKYIQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628594.1 | 1e-129 | PREDICTED: probable WRKY transcription factor 53 isoform X1 | ||||
Refseq | XP_009628595.1 | 1e-129 | PREDICTED: probable WRKY transcription factor 53 isoform X2 | ||||
Swissprot | Q9SUP6 | 6e-36 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A1S3YNI8 | 1e-126 | A0A1S3YNI8_TOBAC; probable WRKY transcription factor 53 isoform X3 | ||||
TrEMBL | A0A1S3YNK8 | 1e-126 | A0A1S3YNK8_TOBAC; probable WRKY transcription factor 53 isoform X1 | ||||
STRING | XP_009628594.1 | 1e-128 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 3e-35 | WRKY family protein |