PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628582.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 713aa    MW: 80206 Da    PI: 5.8561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.39.3e-21581677295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv+angL+egDf+v++ d  ++++
  XP_009628582.1 581 QKVLKQSDVGNLGRIVLPKKEAESHlpELESRDGISIPMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIYADT-KCGK 673
                     79*************************999999********7778*******99777777777777.********************543.8888 PP

                     .EEE CS
              B3  92 lvvk 95 
                     ++++
  XP_009628582.1 674 YLIR 677
                     7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-28572685IPR015300DNA-binding pseudobarrel domain
CDDcd100151.08E-33578679No hitNo description
SuperFamilySSF1019369.42E-23579674IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-20580682IPR003340B3 DNA binding domain
PROSITE profilePS5086310.673580682IPR003340B3 DNA binding domain
PfamPF023626.3E-17581676IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MKRGLEYHGR QDLEDGLENV MVVMDDIQSQ HHHQQTTEFV PMEEEQVLGA IVGDTEIFLN  60
EDGSHSHHHH HHLDVNDTSI FSTDFLPLPD FPCMSSSSST SSAPTALSKP FPTSSSSSSA  120
SSSNSASWTV LKSDAEENVH KKIQPPALSS TTSMELSLPL PEDDVDCLNV MEDLGYMDLI  180
DGNEFWDPCT LFQTDNQNPQ DYNMSDQSFQ VSQDHQQNQE SKPQFEEGDD DPNDGLSFFT  240
GNGELAVIFF EWLKQNKDYI SAEDMRSIKL KRSTIESASK RLGGTKEGKK QLLRLILEWV  300
EQYQLQKKRM KEEAAATAAS DSQCQYQESQ LHDSNPNPNP SFQYNNAVAS DPSSCFYPSP  360
WMPTPSPYIP GPDPFFSTPM APGYAGDPYS NVPSFTNMEY QTMESAQSWP PSQFSAMEAS  420
QYNPYPENEN NLATNANPQG SFSQYPYQLY DGNGERLARL GSSATKEARK KRMARQRRLP  480
SHHYRHHSHQ TQHQSQSSDQ SLRLSGENCT MSPANNPGNW VYWPSAAPSP MMMVPPPEAP  540
QPHPITERPG MQPQNRQKHA SSADKRSQGW KSEKNLKFLL QKVLKQSDVG NLGRIVLPKK  600
EAESHLPELE SRDGISIPME DIGTSRVWNM KYRFWPNNKS RMYLLENTGD FVRANGLQEG  660
DFIVIYADTK CGKYLIRGVK VRQSGPKAEG KKPAKKNVRN SSSAVALMKQ LVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-375766801105B3 domain-containing transcription factor FUS3
6j9b_D5e-375766801105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9113997e-89AY911399.1 Lycopersicon esculentum ABI3 (ABI3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628582.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2
TrEMBLA0A1S3X1N10.0A0A1S3X1N1_TOBAC; B3 domain-containing transcription factor ABI3-like
STRINGXP_009628582.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-130B3 family protein