PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009628417.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 306aa MW: 33627.1 Da PI: 8.6427

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009628417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	201.1	3.3e-62	101	238	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 +g+++CqdCGnqakkdC h+RCRtCC+ rgf+C+thvkstWvpaa+rrerqqq + +++kr+r++ + s+l+ t+l++++s XP_009628417.1 101 QGNVNCQDCGNQAKKDCPHSRCRTCCRGRGFQCQTHVKSTWVPAARRRERQQQFSE-----------NHPKRPRDN--ISGSSLAYTRLPTTSSG 182 7899********************************************988654...........578999997..67889999999999888 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e+ s++P+ev+s+avfrcv+vs+v+d+e+++aYqtav+igGh+fkG+LydqG+++ XP_009628417.1 183 LEVG-SHFPPEVNSPAVFRCVKVSGVEDAEQHYAYQTAVNIGGHIFKGMLYDQGPDQ 238 6665.55**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.9E-57	103	237	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.4E-25	105	147	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-26	188	236	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSWFFSLGGG KEQEQEELAT NNLLLFKNEA IYNKGFKLWQ QLQQRRPEQN HQNQEQDHVD 60 FSMCVGPASS SKPSNNNSNS SRSLGFRVMN MRGGGSSSGD QGNVNCQDCG NQAKKDCPHS 120 RCRTCCRGRG FQCQTHVKST WVPAARRRER QQQFSENHPK RPRDNISGSS LAYTRLPTTS 180 SGLEVGSHFP PEVNSPAVFR CVKVSGVEDA EQHYAYQTAV NIGGHIFKGM LYDQGPDQSR 240 YSSSGGGAGE SSSQPLNFIA GTTAAASSQQ QQGVSIALFD PASIYPNHHQ LSAFMAGTQF 300 FPPPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628417.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Refseq	XP_016510843.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9FXH7	4e-76	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A1S4DBW9	0.0	A0A1S4DBW9_TOBAC; protein SHI RELATED SEQUENCE 5-like
STRING	XP_009628417.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-68	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]