PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009628285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 32054.2 Da PI: 4.2942 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 5.8e-38 | 22 | 80 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+ XP_009628285.1 22 HAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80 6779***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 8 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-32 | 23 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.686 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MLAFPSRPVI MMERNRKSNV EHAPNCPRCA STNTKFCYYN NYSLSQPRYF CKACRRYWTK 60 GGSLRNVPVG GGCRKSRRSR SARKDDNTLL TLNPTLSGNE AAGADIDLAD VFAKYLNQGT 120 TNDNDHDQDN ILQESPLADQ DYCSIGASLS NSPSLDSLVN PSSFENESQL DDTIIMGNYQ 180 DYPCGFLQEE RIQGGGSIHE VSGQDFLDFN PSFVEMQAMI GDEIMGQGEE FDYNTSFAWQ 240 PTMQFQEFGS IFEDNDQLKI STANLASDNN YGCSFDLSSY EIFTRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ718880 | 1e-102 | AJ718880.1 Nicotiana tabacum cDNA-AFLP-fragment BSTC32-2-270, cultivar Bright Yellow 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628285.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Swissprot | Q9SVC5 | 6e-41 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A1S3YQC8 | 0.0 | A0A1S3YQC8_TOBAC; dof zinc finger protein DOF2.4-like | ||||
STRING | XP_009628285.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-36 | Dof family protein |