PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009628152.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 344aa    MW: 37402.9 Da    PI: 6.313
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009628152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.6e-17233267135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009628152.1 233 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 267
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-835321IPR016679Transcription factor, GATA, plant
SMARTSM004012.9E-16227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.479227263IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14229290No hitNo description
Gene3DG3DSA:3.30.50.107.7E-14229264IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.98E-13232279No hitNo description
PfamPF003201.3E-14233267IPR000679Zinc finger, GATA-type
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEASDFFVSG YFSNAGDEQN SNNNNNNFTV DDLLDFSKED EVMTDAFFDS FTGNSADSST  60
VTVVDSCNSS VSGENGHFNG NISCRSFTDA PFPSSELCVP YDDLAELEWL SNFVEESFSS  120
DDVQNLQLIP VTNINSAANN TTDSSSSATT ISAGTNSPPA FPVDTSVPGK ARSKRSRAAP  180
CDWSSRLQLL LSPVTSSSES NDAAANNSTS ATAKATKAPS KKRESIETPG RKCLHCASEK  240
TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV SAKHSNSHRK VLELRRQKEF  300
QRHPAHHHQH QLISQTSIFG VSNGGDDFLL HHHQNCGPNF RHLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628152.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A1S4A1G80.0A0A1S4A1G8_TOBAC; GATA transcription factor
STRINGXP_009628152.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-73GATA transcription factor 12