PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627600.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 553aa    MW: 62538.9 Da    PI: 9.769
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19105154154
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     ++y+GVr++k +g+W+AeIrd      +++r +lg+f+taeeAa a+++a+ +++
  XP_009627600.1 105 KKYRGVRQRK-WGKWAAEIRDaR----RKTRLWLGTFDTAEEAALAYDKAAIEIR 154
                     59*******9.**********55....35**********************9987 PP
2AP260.15.3e-19472522256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr++k +g+W+AeIrd +   kr+r +lg+f+ta+eAa a+++a+ +++g+
  XP_009627600.1 472 KYRGVRQRK-WGKWAAEIRDTR---KRTRTWLGTFDTAYEAALAYDKAAIEIRGA 522
                     8*******9.**********42...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-27105154No hitNo description
PROSITE profilePS5103221.074106167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-25106156IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-18106154IPR016177DNA-binding domain
PfamPF008472.1E-14106155IPR001471AP2/ERF domain
SMARTSM003808.2E-27106166IPR001471AP2/ERF domain
PRINTSPR003675.5E-11107118IPR001471AP2/ERF domain
PRINTSPR003675.5E-11129145IPR001471AP2/ERF domain
CDDcd000186.02E-30472527No hitNo description
SuperFamilySSF541712.03E-19472528IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-27472527IPR001471AP2/ERF domain
PROSITE profilePS5103221.601472529IPR001471AP2/ERF domain
PfamPF008472.2E-13472521IPR001471AP2/ERF domain
SMARTSM003802.8E-33472535IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MASQEKYQKK EAVEKPPEID VVEKSNNQVG ESSGALPHLV RIHVTDRDAT DSSSDEEEKA  60
GGAKTEQHGK TCVKEIIIEN GKTEVIPKKK SKEKKDITVL QGDVKKYRGV RQRKWGKWAA  120
EIRDARRKTR LWLGTFDTAE EAALAYDKAA IEIRAMASQE EHQKNEAVEK PSEIDVVEKP  180
SEVDVVEKPS KIDLVEKSIN QVGESSVVLP RVVRIHLPDS SSDDEEKVEG DKSKRHVRTC  240
VKEIIIENGK TTVISKKKSR EKKDIKLLQE NAKKRIHVPE SDATDSSSDN EEKVEGEKSK  300
RHERMCLNET IIENGKTHVI SKKKSNEKKD VKLLQENAKK RICVPDCDAT DSSSGDEENV  360
EGEKSKRHEL TGAKEIVIEN GKTQVISKKK SKEKKHKKLL QENVKKRTHV LDHDTTDSSS  420
DDEVKAEGKK SQQQEKTCAK EITFENGKTE VISKKKSKEK KDIMLLQGNV NKYRGVRQRK  480
WGKWAAEIRD TRKRTRTWLG TFDTAYEAAL AYDKAAIEIR GANALTNIIK PPPRKEINII  540
FKIPSLPADD ARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17105527158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404408KKRTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627600.10.0PREDICTED: uncharacterized protein LOC104118122 isoform X2
RefseqXP_018633769.10.0PREDICTED: uncharacterized protein LOC104118122 isoform X2
TrEMBLA0A1S4CHG90.0A0A1S4CHG9_TOBAC; uncharacterized protein LOC107818896 isoform X1
STRINGXP_009627599.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.16e-20ERF family protein