PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009627552.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 484aa    MW: 53620 Da    PI: 6.6585
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009627552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.5e-16371121899
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +p  fa+  ++   +++   led+sg++W+v +  + + g+  +++GW  F +++gLk gDf+vF++++++ f  vv++f +
  XP_009627552.1  37 FPPGFARLVSHL--TNQATYLEDSSGQKWKVGI--CIHNGSLAIREGWHAFSSEHGLKMGDFLVFHYIQEQHF--VVQIFGT 112
                     566676555444..344689*************..88888899*************************98888..***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1E-1129113IPR003340B3 DNA binding domain
CDDcd100172.63E-1532110No hitNo description
Gene3DG3DSA:2.40.330.103.9E-1833115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1933115IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-1336111IPR003340B3 DNA binding domain
PROSITE profilePS5086312.57637113IPR003340B3 DNA binding domain
SMARTSM010190.18381474IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-10384473IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-7392472IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-10393476IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-8410472No hitNo description
PROSITE profilePS508638.825413476IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAGSGRTRRR VEAREEAALG FGRRIPFIFC VQSFQYFPPG FARLVSHLTN QATYLEDSSG  60
QKWKVGICIH NGSLAIREGW HAFSSEHGLK MGDFLVFHYI QEQHFVVQIF GTSGCQKISF  120
DNGTSTGKKR QRTNCKATSQ DELLPETDIN SRKKWNSTPS DTAVPESEMA DHEPATTTFA  180
SNIDADTGIL EIVPEAEAIS DILQGENGPG NHVSTNSISQ RESSSVDEVP VEMEFLTFKE  240
PVHFLDIGIT QTEKISEPVN DILLLGQKDE NVHNMGLISS MSSAENGGKG SHLVLPSNKE  300
SRCSNQVTRE KSNEASHIDK RERKEMAAKT HFSAKKLNGK EPNITEKDGQ GFPKAVSGNN  360
KVTKSEPADS GDASFPDAGS FSCLLRADGR NFLELPQSWP QVLTGRKKLE HITIFLQGPD  420
DRPWPVTYHE RAGSKVLASR WAEFTAVYGI KPGDECRFQL LNLSERRFTV HIAHKLDVTQ  480
ATLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446640.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
TrEMBLA0A1S3Y3C90.0A0A1S3Y3C9_TOBAC; B3 domain-containing protein Os01g0905400-like
STRINGXP_009627552.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-11B3 family protein