PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624057.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 342aa    MW: 38662.8 Da    PI: 5.1705
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.2e-28136196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g++fpr+YYrCt++   gC + k+v++s+edp v+e+tY+g+H ++
  XP_009624057.1 136 DDGYSWRKYGQKDILGANFPRAYYRCTHKntqGCLAIKQVQQSDEDPLVFEVTYKGKHSCK 196
                     8***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-27131197IPR003657WRKY domain
SuperFamilySSF1182903.92E-25133197IPR003657WRKY domain
SMARTSM007748.3E-40135197IPR003657WRKY domain
PROSITE profilePS5081122.745136198IPR003657WRKY domain
PfamPF031061.9E-26136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEKVKAWEKM TLITELTQGL ELVNRLKSKI DPLASPEECD LLLEKILSSL DKSLSILNLK  60
AVNVIRDPCC CSSISVLGVS KFGIPTSTLG KSPKSEGSDL DYSRDQGKNM VFKKRKLLQQ  120
WSKQVRISGI EDLNHDDGYS WRKYGQKDIL GANFPRAYYR CTHKNTQGCL AIKQVQQSDE  180
DPLVFEVTYK GKHSCKASQS VDISEETQKA NYTNKNQYQL QKQKQKVGNQ KVENLNIIKE  240
EEFPFTPPKS ESANAQFFAN SMEPFTSPIT SESLHLSLLP TQEEEFELDQ ILQSSKLGRT  300
DFISTPTSVI NSPFCGYWDL SVDDEVDTID PSLMIDISEF FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19134196769OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8087550.0KJ808755.1 Nicotiana tabacum WRKY transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624057.10.0PREDICTED: probable WRKY transcription factor 41 isoform X1
RefseqXP_016470466.10.0PREDICTED: probable WRKY transcription factor 41
RefseqXP_018632834.10.0PREDICTED: probable WRKY transcription factor 41 isoform X1
RefseqXP_018632835.10.0PREDICTED: probable WRKY transcription factor 41 isoform X1
TrEMBLA0A1S4A1M40.0A0A1S4A1M4_TOBAC; probable WRKY transcription factor 41
STRINGXP_009624057.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-38WRKY family protein