PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009624042.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 297aa    MW: 33077 Da    PI: 8.3525
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009624042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-32114167255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_009624042.1 114 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 167
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-15111168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28112168IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-24114167IPR006447Myb domain, plants
PfamPF002494.6E-7115166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRDTISSSMP DLSLQISLPS NISKCDNHSF STESGSSGGS DLSHENNGIF RPQKAFNNLP  60
LLTSFEPTLS LGFGQLPNRN LQHYHQQYQP QIYGCDFKRS SRMISGVKRS VRAPRMRWTS  120
TLHAHFVHAV QLLGGHERAT PKSVLELMNV KDLTLAHVKS HLQMYRTVKS TDKTTAKGLT  180
EIFVNPNRGN NISEYEKSCE EIDTMTDPSV SLSNTIPQNA HIRVSTSFMP ETNAWSHSNR  240
ERSFPYPHIY SNMDGVETAD KSSSSDTLVN LEFTLGRPSL NMGHAGSSSN DSTLLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-17115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17115169357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17115169458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719901e-66KP271990.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-293 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624042.10.0PREDICTED: probable transcription factor KAN4
RefseqXP_009624048.10.0PREDICTED: probable transcription factor KAN4
RefseqXP_016507830.10.0PREDICTED: probable transcription factor KAN4
RefseqXP_016507831.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A1S4D3190.0A0A1S4D319_TOBAC; probable transcription factor KAN4
STRINGXP_009624042.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122621822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.15e-61G2-like family protein