PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623906.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 420aa    MW: 46940.6 Da    PI: 6.7212
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.96.5e-38183279297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     lfqrlwse+Deiv+L+G+id+++k++++p++d++af+ef+kks++++vsk+ql +KirrLK+K++++  k +k +ke +fsk+h+qk++elskki
  XP_009623906.1 183 LFQRLWSEDDEIVILKGMIDYRSKKKSDPVADLSAFHEFIKKSLHVDVSKTQLQDKIRRLKRKYENNAGKeKKGKKERTFSKPHEQKTYELSKKI 277
                     79******************************************************************99455667999**************** PP

          DUF573  96 Wg 97 
                     W 
  XP_009623906.1 278 WS 279
                     *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-34184279IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAKKHTEEQV ESGDEMEVSS PGNADSESGS ESESESESEP EPEPEKQQPP LKKPPVAAPK  60
KPQPPEDSSS SAEESGSGSE SESESESEPG TQKPNPVIVK PLASKPMDDP KKFAPKPRSK  120
PNATAKPTSP PPAKSSAGAG AKRPVTVHDG ETKESKRSKK TPKKEIETPV KQKTPTEDVK  180
RQLFQRLWSE DDEIVILKGM IDYRSKKKSD PVADLSAFHE FIKKSLHVDV SKTQLQDKIR  240
RLKRKYENNA GKEKKGKKER TFSKPHEQKT YELSKKIWSK EKTDNKGEKV EEVDRVVENG  300
TTSEKGQSKR EGQDNVVLED AVKEDEEQSA DVVKREKNIG LAAQNLSLVS CERSVAELEK  360
WLEENSGLIS IEKRNEMKEK LTSLRLAEFD LCFRRVELIT EQGKLVREAM EASGINIFQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623906.10.0PREDICTED: STOREKEEPER protein-like
TrEMBLA0A1S4A9L40.0A0A1S4A9L4_TOBAC; mediator-associated protein 1-like
STRINGXP_009623906.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.18e-25DNA-binding storekeeper protein-related transcriptional regulator