PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623664.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 270aa    MW: 29985.5 Da    PI: 8.0618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-22116175258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYG K + g+++pr YYrC+ +   +C+++k v+rs+++ +v+e+++ g+H +
  XP_009623664.1 116 EDGYSWRKYGHKYILGAKHPREYYRCARRrlsSCTATKMVQRSETEASVFEVINGGSHSC 175
                     7**************************998999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-22102177IPR003657WRKY domain
PROSITE profilePS5081117.454110174IPR003657WRKY domain
SuperFamilySSF1182904.05E-20112177IPR003657WRKY domain
SMARTSM007743.2E-26115177IPR003657WRKY domain
PfamPF031066.8E-21116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGEENCWERE VVITELTKGR ELMCQLQKHF DPMKILSSYD KALSLLNGTA LSGMNKGKQI  60
SNPAPSSSTG KLESLHLLAD ASAKSSDRPC NSRKRKMVSR RTEYVHARSG EEVPPEDGYS  120
WRKYGHKYIL GAKHPREYYR CARRRLSSCT ATKMVQRSET EASVFEVING GSHSCGQESK  180
LQQNGELVAA LTKETQCDEV GRRGEISESF FPEMVSTPNT SFNNSSTGIV NSNSILNMTN  240
SDFMTTPTSA HAEGNSSAED LWTTFFSSLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196SRKRKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623664.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S4DGN40.0A0A1S4DGN4_TOBAC; probable WRKY transcription factor 41
STRINGXP_009623664.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-28WRKY family protein