PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623635.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 181aa MW: 20962.1 Da PI: 10.2092

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623635.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.5	2e-19	16	54	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +ien+ nrq tfskRrng++KKA+EL v++daev +i+ XP_009623635.1 16 KIENQNNRQMTFSKRRNGVFKKANELAVMTDAEVGIIVC 54 79*********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-20	1	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-14	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-21	12	77	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.339	12	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-19	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-14	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-14	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSTRRIKVCK SVRLAKIENQ NNRQMTFSKR RNGVFKKANE LAVMTDAEVG IIVCPQGSLP 60 YSFGHPNVNE TISKYVGEER PPSPSSPGID DKYVQMFRKA NSREHNTRLN SLQDQLVFAL 120 NLKRKLKQMN KKVESHQEWF KCPIEKMNYT EASMLEDLLL KVKNYGIERG YGYENGKWKA 180 E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	LKRKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623635.1	1e-134	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1U7VX01	1e-112	A0A1U7VX01_NICSY; agamous-like MADS-box protein AGL62
STRING	XP_009623635.1	1e-134	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3829	4	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-18	AGAMOUS-like 61