PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009623553.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 357aa MW: 38007.5 Da PI: 5.4665

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009623553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.1	1.1e-36	89	189	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + + ++ +++ ++a XP_009623553.1 89 PPAKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIDATGTGTVPAIAVsVNGTLKIPTTSPAT-NSEGESA 182 6799************************************************************88888444211111111111111.1111111 PP TCP 96 kskksqk 102 +++++++ XP_009623553.1 183 TKRRKRA 189 1222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-29	94	174	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.816	95	149	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MENKQNIERE DDEVSDSKIL SADPLLGDSE DYTITAVGQH VTDAEGVGPS PPPSTEIVPL 60 LKKEPEENDL RGGTMSVGLN MQLQKVEKPP AKRSSKDRHT KVEGRGRRIR MPAACAARIF 120 QLTRELGHKS DGETIRWLLE RAEPAIIDAT GTGTVPAIAV SVNGTLKIPT TSPATNSEGE 180 SATKRRKRAA NSEFYDVHEP SHFAPVAPIA PQSLLPVWAV GSSNGLVPTT AVTGGTTFFM 240 VQPPPTSTTT IATTAGPSYP PQLWATPIYN IPGRPISNYV SAMQPGIISA AEVQVSSSKS 300 DGNVSAMAPS SSSTGVTTST TTQMLRDFSL EIYDKRELQF MVGSGSSEND QTSSSKS

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MENKQNIERE DDEVSDSKIL SADPLLGDSE DYTITAVGQH VTDAEGVGPS PPPSTEIVPL  60
LKKEPEENDL RGGTMSVGLN MQLQKVEKPP AKRSSKDRHT KVEGRGRRIR MPAACAARIF  120
QLTRELGHKS DGETIRWLLE RAEPAIIDAT GTGTVPAIAV SVNGTLKIPT TSPATNSEGE  180
SATKRRKRAA NSEFYDVHEP SHFAPVAPIA PQSLLPVWAV GSSNGLVPTT AVTGGTTFFM  240
VQPPPTSTTT IATTAGPSYP PQLWATPIYN IPGRPISNYV SAMQPGIISA AEVQVSSSKS  300
DGNVSAMAPS SSSTGVTTST TTQMLRDFSL EIYDKRELQF MVGSGSSEND QTSSSKS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009623553.1	0.0	PREDICTED: transcription factor TCP19
Refseq	XP_016436637.1	0.0	PREDICTED: transcription factor TCP19-like
Refseq	XP_018632696.1	0.0	PREDICTED: transcription factor TCP19
Swissprot	Q9LT89	6e-71	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A1S3X9Q1	0.0	A0A1S3X9Q1_TOBAC; transcription factor TCP19-like
STRING	XP_009623553.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-69	TCP family protein