PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623534.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 487aa    MW: 53973.1 Da    PI: 6.6465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623534.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13315361455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+ +P+       +++Ka+ L  Av YI++L+
  XP_009623534.1 315 NHVEAERQRREKLNHRFYALRSAVPNV-----SRMDKASLLSDAVSYINQLK 361
                     799***********************6.....4*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5271250IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.939311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17314373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-14314364No hitNo description
PfamPF000101.6E-10315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15315370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-16317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDGLFPLISC LLVLTPSQLL GFHYYYYSIN YTVLSSCCFL FSSTYIKFMG SSSPMVDSSL  60
PQGDNQLPLG LQHMLQYVIK SQPDWWAYAI FWQTSTDDEG KPFLAWGDGY FQGAKGGAAV  120
NNKGSSSDAA QSERKKVIRG IQALIDGDNN NLMDDGNVTD IEWFYVMSLA RSFSVDNGSV  180
PGKAFSSGNF VWFTGAAQFQ VYSCERAKEA QIHGIQTLLC IPTSNGVLEL GSAHLIKENF  240
DLVQQVKSLF LSCPPIHFLE KSICFADIGL VTGLQQDNED KLEKQQLDSD KKAVAKKRGR  300
KPKGGDNNIN MAALNHVEAE RQRREKLNHR FYALRSAVPN VSRMDKASLL SDAVSYINQL  360
KAKVDELELQ LIDHSSSSNK KQKSNESGEN QSTNTSVDQE LRPNSSLEVE VKIVGPDAMI  420
RVQSENVNYP SAKLMSALRH LQLQVHHASI SSVNNLMLHD VVVKVPQGLR TEDGLRTALI  480
TTLESNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-37712509192Transcription factor MYC3
4rqw_B9e-37712509192Transcription factor MYC3
4rs9_A9e-37712509192Transcription factor MYC3
4yz6_A9e-37712509192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435398.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632639.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632642.10.0PREDICTED: transcription factor MYC2-like isoform X1
RefseqXP_018632644.10.0PREDICTED: transcription factor MYC2-like isoform X1
TrEMBLA0A1S3X6Q70.0A0A1S3X6Q7_TOBAC; transcription factor MYC2-like isoform X1
STRINGXP_009623534.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-82bHLH family protein