PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009622648.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 334aa MW: 36408.2 Da PI: 7.4261

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009622648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.9	1.5e-65	109	253	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 ++sCqdCGnqakkdC+h+RCRtCCksrg++C+thv+stWvpaakrre+qqq a++++++ ++++++kr +++ + s+l +t l+s+++ XP_009622648.1 109 AGISCQDCGNQAKKDCQHMRCRTCCKSRGLQCQTHVRSTWVPAAKRREKQQQIASLQQQQH--RDNNSPKRLKDD--PSGSSLVCTGLPSNTTG- 198 4689************************************************9977664..466667777766..78899999999755. PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le+ ++P++v+s+avf++vr+ss++++e+++aYqtav+igGh+fkGiLydqGle+ XP_009622648.1 199 -LEVGNFPSKVNSTAVFHRVRMSSIEENEDQIAYQTAVNIGGHIFKGILYDQGLES 253 .89999**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.0E-61	110	252	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.9E-27	112	154	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.2E-26	204	251	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAGFFSLGGG RETSQEQHHQ ETTNHHNPES NWFLYRNHDQ ELPAYKGFEL WQQQQQQDEQ 60 QNYQIRNPII NPLQDLYPTS AIGLGVGPTA TDHGASRSAA FIMMRSSGAG ISCQDCGNQA 120 KKDCQHMRCR TCCKSRGLQC QTHVRSTWVP AAKRREKQQQ IASLQQQQHR DNNSPKRLKD 180 DPSGSSLVCT GLPSNTTGLE VGNFPSKVNS TAVFHRVRMS SIEENEDQIA YQTAVNIGGH 240 IFKGILYDQG LESQYNMNAT TGDSSSGGEP VVPHQHKLIG TVTSAATSNA AAGGGAAVAA 300 GEGSHFLEHS IYSAPLINTF MAAGTHFFPP PARS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	1e-67	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
GenBank	KC331910	1e-67	KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622648.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-114	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4BDV0	0.0	A0A1S4BDV0_TOBAC; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009622648.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-65	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]