PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 269aa MW: 29526 Da PI: 9.4079 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 68.2 | 1.6e-21 | 176 | 268 | 140 | 233 |
GRAS 140 pslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklv 231 +lR+Tg g+ +++++++l+++g++La++Ae++gv+fef+ +va++l+dl+ e L++++ E+++Vn+v++lhrll++++++e+ vL+ v XP_009622611.1 176 MTLRLTGSGPTQPDNTDALQQVGWKLAQLAETIGVKFEFQGFVANSLADLDDEILDLRSsieTEVVVVNSVFELHRLLARPGAVEK----VLNSV 266 489******************************************************99999**********************99....99999 PP GRAS 232 ks 233 k+ XP_009622611.1 267 KQ 268 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.513 | 1 | 269 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-19 | 176 | 268 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MTRPRVVDRI REEEWSVGLR NREGCATKAE KVLAGGKIFS THSQSRSRKC EEGMESGLIV 60 HREHGGRVAF VKKSSPGNLG AELLWTTKAS IKDVSTFQIQ AITCSCSGSG ASHLRRMIAG 120 VKAQIQLLGD YVVAAMSSLL SLLQFRFIEF TVIMELLACL ARSVRRHRNS GGSWVMTLRL 180 TGSGPTQPDN TDALQQVGWK LAQLAETIGV KFEFQGFVAN SLADLDDEIL DLRSSIETEV 240 VVVNSVFELH RLLARPGAVE KVLNSVKQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR082148 | 2e-99 | KR082148.1 Nicotiana benthamiana GAI1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622611.1 | 0.0 | PREDICTED: DELLA protein RGA2-like | ||||
STRING | XP_009622611.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 1e-34 | GRAS family protein |