PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 168aa MW: 19806.2 Da PI: 4.7437 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.4 | 1.8e-16 | 9 | 53 | 8 | 52 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++eq++ Lee+F ++++p + +e+L+++lgL+++ Vk+WF N+R XP_009622560.1 9 SDEQIQKLEEVFSQTPNPENDVIEKLSEELGLDTNHVKIWFDNKR 53 689*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.5E-9 | 1 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-14 | 7 | 53 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.649 | 9 | 59 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.85E-11 | 9 | 54 | No hit | No description |
SuperFamily | SSF46689 | 8.98E-12 | 9 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.9E-14 | 9 | 53 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDSPSGSSSD EQIQKLEEVF SQTPNPENDV IEKLSEELGL DTNHVKIWFD NKRCYIQAQR 60 DKEEGENLRL ENSRLLSENL QMSLELRNRL CATCNPEKQR KLLQDLQNEN AILQTELTII 120 SKMHDHLKEN PERYLLLKYH LRNYDNPSGL DLDLKVECDH NFPRLNWN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622560.1 | 1e-120 | PREDICTED: homeobox-leucine zipper protein ROC8-like | ||||
TrEMBL | A0A1J6K6E1 | 1e-104 | A0A1J6K6E1_NICAT; Uncharacterized protein | ||||
STRING | XP_009622560.1 | 1e-119 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15229 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 9e-17 | homeobox-7 |