PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009622559.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 670aa MW: 78052 Da PI: 6.5091

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009622559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.3e-22	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g+++++ + ++r+etrtgC a+l++k+ + + w++ ++el+HnH+++ XP_009622559.1 59 DFYNMYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSGAN-----HPRPETRTGCPAMLVIKLVDLKSWRIVEVELQHNHPVS 143 6*******************999**************9988.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.6E-20	59	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-23	264	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.235	550	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.8E-5	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MEAVCLNSEP VFEDCEEYED EEDCSLEEHD DEVHEKDSKM KSLQPTIGLE FGSFDEAYDF 60 YNMYGKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSGANHPRPE TRTGCPAMLV 120 IKLVDLKSWR IVEVELQHNH PVSPEIRRFY KSHKKMILAA KKQQESTPVT EVHTIKLYRM 180 SVDAACNGLQ KIKEKDNRLP VDTSKHLELK EGDTNALYNY FCRMKLTNPN FFYLMDLDDQ 240 GCLRNVFWAD ARSRAAFNYF SDAIAIDTTS LRNKYELPII SFVGVNNHGQ PVLLGCGFLG 300 HESVEYFIWI FRSWHTCMLG RHPQVIVTDQ SKPLQIAVST VFPQARHCYC LSYIMQRLPE 360 KLGGLDGYES IKTQLYKAVY ISLKITEFEC SWGQMINQHG LKDNKWLQSL YEDREKWVPV 420 YLKDISFMGI MPIKENESLN PYFDGFVHKH TSFKEFVDKY DLALQRKHMK EAMADMESKS 480 SSFELKTNCN FEVQLSKIFT KEIFKKFQAE VEGMYSCFNT RQVNINGPIM TFVVKERVES 540 EGSEEEVRQF EVLYETTQAE IRCICSLFNF KGYLCRHALN VLDYNGVQEI PSQYILSRWD 600 KDYKRKFPVD SGLCHIDVNN PVELYNILHK HVMQVVEEGA QSEEHYKAVL RELEALLNRF 660 SLEDNNLASL

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MEAVCLNSEP VFEDCEEYED EEDCSLEEHD DEVHEKDSKM KSLQPTIGLE FGSFDEAYDF  60
YNMYGKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSGANHPRPE TRTGCPAMLV  120
IKLVDLKSWR IVEVELQHNH PVSPEIRRFY KSHKKMILAA KKQQESTPVT EVHTIKLYRM  180
SVDAACNGLQ KIKEKDNRLP VDTSKHLELK EGDTNALYNY FCRMKLTNPN FFYLMDLDDQ  240
GCLRNVFWAD ARSRAAFNYF SDAIAIDTTS LRNKYELPII SFVGVNNHGQ PVLLGCGFLG  300
HESVEYFIWI FRSWHTCMLG RHPQVIVTDQ SKPLQIAVST VFPQARHCYC LSYIMQRLPE  360
KLGGLDGYES IKTQLYKAVY ISLKITEFEC SWGQMINQHG LKDNKWLQSL YEDREKWVPV  420
YLKDISFMGI MPIKENESLN PYFDGFVHKH TSFKEFVDKY DLALQRKHMK EAMADMESKS  480
SSFELKTNCN FEVQLSKIFT KEIFKKFQAE VEGMYSCFNT RQVNINGPIM TFVVKERVES  540
EGSEEEVRQF EVLYETTQAE IRCICSLFNF KGYLCRHALN VLDYNGVQEI PSQYILSRWD  600
KDYKRKFPVD SGLCHIDVNN PVELYNILHK HVMQVVEEGA QSEEHYKAVL RELEALLNRF  660
SLEDNNLASL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622495.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1S3XPD4	0.0	A0A1S3XPD4_TOBAC; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRING	XP_009622495.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]