PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009622546.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 457aa    MW: 50037.6 Da    PI: 6.3525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009622546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31246304259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  XP_009622546.1 246 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 304
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.673240306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-30244306IPR003657WRKY domain
SuperFamilySSF1182903.92E-26244306IPR003657WRKY domain
SMARTSM007741.4E-37245305IPR003657WRKY domain
PfamPF031069.8E-26247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MCSKFQLQKT TMENNYQGDL ADIFLGSSGQ NISGANNITT TSGESSPTVA AAAVTDGWLG  60
QFPSYPINYS ASGIEEPSVQ DFGDPFCNLR DPLLHDLDMM PAGSNLFISN KDNINNNNDN  120
ISLFGPKILE ETEMKSRPTG NIFSRMLQIS PTTKLAAMSP CNSPMTAAVA LQPPSTVIAT  180
GDALVANDAI MFPNSSKTCL VENSGLQISS PRNTGIKRRK SQAKKVVCIP APAPANSRQG  240
GEIVPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE  300
HNHPWPTQRN ALAGSTRSQP NNSKHTTTST SKNNTNSKDD EQNTSTVAQV NISKVKEEVA  360
ELQDLRHDHH HQQLAVEMRD FEFSKDSYQP ILPDSSSNHS HEDFFADLVE LEADPLNLLF  420
AKTLSGDINE AGQKKAIDAF NLYDWSGNNN NKSQADP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-26220307280Disease resistance protein RRS1
5w3x_D5e-26220307280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-66HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622546.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A1S4A2I60.0A0A1S4A2I6_TOBAC; probable WRKY transcription factor 14
STRINGXP_009622546.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-89WRKY DNA-binding protein 14