PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 18100.4 Da PI: 6.261 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.6 | 3e-08 | 20 | 54 | 18 | 55 |
AP2 18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +rdp+ r r++lg+f t e A +a+++a+ +++g XP_009622476.1 20 TVRDPR----RtGRVWLGTFNTVENATRAYDKAAIEFRG 54 567762....359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.998 | 2 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-7 | 20 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-14 | 21 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-16 | 21 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-10 | 21 | 62 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.5E-5 | 25 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MVVLGVVQLG LMAGLMVFVT VRDPRRTGRV WLGTFNTVEN ATRAYDKAAI EFRGPRAKFN 60 FSFADYTSIQ QHNTITSISC SKQQQQEPVQ LEQRNKTDAG IGKEEEFWDQ LMKWDNEIQE 120 CLNMKDFNGH SLDSAGNLEG VLLIASDDHF QLNKNWKGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274022 | 1e-145 | AB274022.1 Nicotiana tabacum WRAF2 mRNA for wound-responsive AP2 like factor 2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622476.1 | 1e-117 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1S3XZ27 | 1e-93 | A0A1S3XZ27_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009622476.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24053 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-14 | redox responsive transcription factor 1 |