PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009622214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 320aa MW: 36394.4 Da PI: 9.4122 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 147 | 191 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + +++G+g+Wk+I+r+ +t+ q+ s+ qky XP_009622214.1 147 PWTEGEHQLFLMGLNRFGKGDWKSISRYYVVSKTPTQVASHAQKY 191 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.992 | 31 | 87 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5 | 32 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.5E-6 | 35 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.494 | 139 | 196 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-15 | 141 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-8 | 144 | 194 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-16 | 145 | 194 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.7E-8 | 147 | 191 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-10 | 147 | 191 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.18E-8 | 147 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEWPEFLERS NSQESTFGLF SATPQANEVV ARTVQWTPEE KQVFENALSV FNNPISPSFF 60 EYVASKLPHK PLEEIKKYYL ALFKDVEMEN PVPKNKAPAA NGYELDHDQQ HNYQVPQEDD 120 HSDMEAARNG TPPPVENNRP RRRRGIPWTE GEHQLFLMGL NRFGKGDWKS ISRYYVVSKT 180 PTQVASHAQK YFGRRNCATP PERRRPSIND IQTVTLNPRA TTVTAQINNG RLAPLNNNNQ 240 GSSSMPFHYP YNFGGAMFGH NSHGNYGSFV NRGEASGSNS INMQHNNDNN NNNNNLRRLV 300 LPRPFLSMCL ASATRNNNRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009622214.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1S4AVQ7 | 0.0 | A0A1S4AVQ7_TOBAC; transcription factor DIVARICATA-like | ||||
STRING | XP_009622214.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5234 | 20 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 3e-32 | MYB family protein |