PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621793.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 306aa    MW: 33587.5 Da    PI: 9.221
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.5e-20203236134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_009621793.1 203 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 236
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.767197233IPR000679Zinc finger, GATA-type
SMARTSM004018.9E-15197247IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14202234IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-15202260No hitNo description
CDDcd002021.70E-16202249No hitNo description
PROSITE patternPS003440203228IPR000679Zinc finger, GATA-type
PfamPF003201.1E-17203236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKMTMVGHCG YLDGIPTGPV VDEDFDDILN FLDFPLESLE EDGQGVEWDA SESKFLGPIP  60
TDALMAFPPV PQGNIGNSRV KAEPNSNHPI KVTEGQGSGI FQTQSPVSVL ESSNSCSGGK  120
SISIKHDIAI PVRPRSKRPR SSALNPWILM PPISATRFAS KKTCDARKGK EKKRKMSLLS  180
VPQIADVTKK KTTSTQQSSF KKCTHCQVTK TPQWREGPLG PKTLCNACGV RYRSGRLFPE  240
YRPAASPTFV PTLHSNSHRK VVEMRKKALY GETSALEEPH SVIVEGPPMS PAPEFVPMSS  300
YLFDVY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX731110.0X73111.1 Nicotiana tabacum mRNA for GATA-1 zinc finger protein (Ntl1-Nt7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621793.10.0PREDICTED: GATA transcription factor 11-like isoform X1
RefseqXP_016465977.10.0PREDICTED: GATA transcription factor 11-like isoform X1
TrEMBLA0A1S3ZNP50.0A0A1S3ZNP5_TOBAC; GATA transcription factor 11-like isoform X1
STRINGXP_009621793.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-38GATA transcription factor 11