PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621407.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 493aa    MW: 53780.2 Da    PI: 6.9323
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-10205246546
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk
  XP_009621407.1 205 KTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLSQLEQELK 246
                     788*************************99888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.5E-8197248No hitNo description
SMARTSM003382.6E-7201266IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438203247IPR004827Basic-leucine zipper domain
CDDcd147085.48E-22205256No hitNo description
PfamPF001707.8E-7205246IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-6205247No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
PfamPF141441.3E-29290363IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MQAFKAAVLP AVTLNNNNNN NSNMYCHSSF YLRGDEASRH AAARFADIGE LEQSTGFPQE  60
DAISLSRSSL YGEMRPNNVG VVSSNNNLHF GELNTSIGST EMGSSETGGV EAGGRFMLHK  120
AQTAMVGGGG VVGGGGGGGA VTLGNGHFEN WADSGIADNS HSQQTDTSTD VDTDERNHQG  180
QGVQHGALMT VDSIDQSKVK HGDQKTLRRL AQNREAARKS RLRKKAYVQQ LETSRLKLSQ  240
LEQELKRARQ QGIFIANGYA GDQSLSAGGN GALAFDMDYA RWLEDHQRLI SDLRSAVNSH  300
RGDNELRLLV DGVMLHYDDK FKLKSVGAKS DVFHMLSGMW KTPAERCFMW LGGFRSSELL  360
KILGNHLEPL TEQQLMGICN LQQSSQQAED ALSQGMEALQ QSLVDTLSSA SLGPTGSGNV  420
ADYMGQMAIA MGKLATLENF LYQADLLRQQ TLQQLHRILT TRQAARALLV ISDYMSRLRA  480
LSSLWLARPK DQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-102HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621407.10.0PREDICTED: transcription factor TGA2.3-like
SwissprotQ415581e-177HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1S3YR410.0A0A1S3YR41_TOBAC; transcription factor HBP-1b(C38)-like
STRINGXP_009621407.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-143bZIP family protein