PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621297.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 500aa    MW: 55067.5 Da    PI: 6.7089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09315362455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009621297.1 315 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 362
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-10309366No hitNo description
SuperFamilySSF474597.2E-17309379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16311376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6315362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10317367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEKDYFMNGG ITNPPLQFEP TMTFPSNWNS LHSGQSSDFF LNPNWDHDST HQFDSTLNSI  60
VSSSPAELIG KVTTVCSSPQ PPFNNNNTNN SCYTTPKLQM PNLGNSLPLN PPPVPLPAVS  120
ADPGFAQRAA KFSCFGSRSF NGRTSPWGEL THRYAQQLGN GKLPRVSSSP SLKQAGSPLQ  180
IKNSGQTRME LMSTNLCRPV TNSNEPVSEP SGETGPKTPT ELNSTRKRKT ASRGKTKEDA  240
PANGNMGGEG DDNARTKRCK QVEGNETETG TVNMEETKGN EGDETQNQTI ENQKPPEPPK  300
DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS  360
LQRQVEFLSM KLASVNPSLD FPAENLLPKD ICQPNGSLPQ PVFPVDYQQP RQQLSSDIPN  420
GVLSQCSANT LDNSLFRTLG MQLPSLDGLG QYLNQFPTMC EDDLQSIVKM GFTQNPNKDL  480
TLQSQSFPGP HQTSHMKIEM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229TRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621297.10.0PREDICTED: transcription factor bHLH78-like isoform X1
TrEMBLA0A1S3Y7440.0A0A1S3Y744_TOBAC; transcription factor bHLH62-like
STRINGXP_009621297.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-89bHLH family protein