PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009621049.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1098aa    MW: 121610 Da    PI: 6.3781
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009621049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.76.1e-20132232198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++ yr++++r++lt+GW+  v+ ++L +gD+v+F +d++++
  XP_009621049.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNVWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQ 225
                     99*****************************9777766.49************************************************665555 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     f   +++++
  XP_009621049.1 226 F--QLGIRK 232
                     5..888776 PP
2Auxin_resp119.52.7e-39258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L+
  XP_009621049.1 258 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDMDPVRWKNSQWRNLQ 341
                     79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-39123247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-41123261IPR015300DNA-binding pseudobarrel domain
CDDcd100175.61E-18131232No hitNo description
PROSITE profilePS5086311.194132234IPR003340B3 DNA binding domain
SMARTSM010194.5E-21132234IPR003340B3 DNA binding domain
PfamPF023621.3E-17132233IPR003340B3 DNA binding domain
PfamPF065071.6E-34258341IPR010525Auxin response factor
PROSITE profilePS5174527.0119861070IPR000270PB1 domain
PfamPF023093.2E-69881071IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-610031064No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MKTPANGAGA GTQPAAGNED EKKRINPELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA  60
SIKKDVEAQV PNYPNLPSKL ICLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL  120
SMKANKPQPE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDYSLQPPAQ ELVARDLHDN  180
VWTFRHVYRG QPKRHLLTTG WSLVVSGKRL FAGDSVLFIR DEKHQFQLGI RKANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRAGPSE FVIPLAKYYK ATYSSQVSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDMDPV RWKNSQWRNL QVGWDESTAG ERINRVSIWE  360
IEPITAPFLI CSSPFFSSKR PRQPGMPDSD CSDMDGVFKR TMPWLGDDFG MTDPQGLPGL  420
SLVQWMNMQK SPSLANPMMS NYLNSLSGSV LQNLAGADLS RQLGLAAPQL QQQHNLQFHR  480
PNQQGQQLDQ LQKLPAATLN SLDSIMQSQQ QLYDIGQQPR QNSTNQSLPT TQVQSQLLQA  540
QSLVQSQNVL PPQQSIQNQL QRNLPQSLPQ QQPQQQILSQ SQQQNFMSSQ PPDPVNQHHF  600
SENQFQLLQK LHQQQKSLLA QQSALQQSSH LGSIQDQQKQ FLDVSQNFSR SLATSQMLDA  660
SQTTSTSLSH SQIVQQQMTR THSQSNLRFV QPTQQPKLQQ QQSGILPDLS GPVGYSLPRT  720
TYQLTTNGSS LTRTAGGGQP VMDEVPSWST SVSTNNCQNV VQQNLNGRIH ESTGARDETT  780
HYSGPLFNSS GLEVMSANSN LVKELQQKTD VKPSINVSKN QNHGFLAPQT LNTAGHQLDY  840
LDSSSSATSA CLSQNDVQLQ QTTDPPLSSS SQPLIFRDSP DGEVQGDSRN DIAFGANMEN  900
QLGLPMMPDP LITKSLVGSR KDFSDNLSSG GGMLSSYENP KETQPELLAS MASEYMTFNS  960
MDSTINDGNF MDRGAWDPPP QLPRMRTFTK VYKRGAVGRS IDIGRYSGYE ELKLDLARRF  1020
GIEGQLEDRQ RIGWKLVYVD HENDDLLVGD DPWEEFVSCV RCIKILSPQE VQQMSLDGDF  1080
GGNVLQNQAC SSSDAGGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1652136247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621049.10.0PREDICTED: auxin response factor 19-like isoform X2
RefseqXP_016496088.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1S4C4V30.0A0A1S4C4V3_TOBAC; Auxin response factor
STRINGXP_009621049.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19