PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009620431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 695aa MW: 80543.5 Da PI: 7.9342 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.7 | 3.4e-22 | 84 | 167 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l XP_009620431.1 84 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHLL 167 69*****************************************9988.....99*********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-19 | 84 | 167 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-25 | 286 | 379 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.841 | 573 | 609 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 584 | 611 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.1E-4 | 585 | 605 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MEEASLDSEL DLTGQGSGRL QEIESDGLDD QNSEQIESDE LFSQNGGQIE SDGLDDQNGF 60 TDGQKQFIAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS 120 QGFKRIKDVN RLRKETRTGC PAMMRMRMVD SKRWRVLEVT LEHNHLLGAK AYKSIKKTGA 180 GNKKKLDSSC DAEVRTIKLY RALVIDAGAN RNANFSARRC KTSSDCHDKL NLRKGDTQAM 240 YNYFCRMQLT NPNFFYLMDL NDEGQLRNVF WVDARSRAAY AYFIDVIYFD NSYLSNKYEI 300 PLVAFVGTNH HDQSVLLGCG LLAGESKASY VWVFKAWLTC SLGRFPQTII TERCKILESA 360 ISEVFPRSSH RVALSHIMRK VPEKLGGLRN YDAIRKALIK TIYEALKPFD FEASWRFMIQ 420 RFGVGDHEWL LSLYDDRTKW APVYLKDTFF AGMATARSNE TLTAFFDKYL HKQTPLKEFL 480 DKYELALQKK YKEEAVADTE SRNSNPELKT RCSFELQLAK VYTREIFKRF QLEVEEMYSC 540 FSTTQLHVDG QMVIFLVKER VLGEGNRREI RDYEVLYNRA AAEVRCICSC FNFYGYLCRH 600 ALCVLNFNGV EEIPSKYILS RWKKDYKRLC ASDLESSYTE STEHVQWFSQ LYRSALQVVE 660 EGVISPDHYK VALNAFEESL TRVHHIEEKL NKKSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620425.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A1S4CKF0 | 0.0 | A0A1S4CKF0_TOBAC; protein FAR1-RELATED SEQUENCE 6-like | ||||
STRING | XP_009620425.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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