PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009620361.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 264aa MW: 29821.9 Da PI: 9.0968 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.9e-08 | 70 | 91 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f r G C+yGd C++aH XP_009620361.1 70 PPCLQFKRWGSCSYGDECRYAH 91 89******************** PP | |||||||
2 | zf-CCCH | 19.4 | 1.8e-06 | 109 | 132 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k + C+ff + +C+yG++C+F H XP_009620361.1 109 KVKSCHFFGSGKECPYGNKCHFLH 132 667799888888************ PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 177 | 202 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C ++ rtGtC yG++C+FaHg+ XP_009620361.1 177 KTRFCINWERTGTCAYGSKCQFAHGK 202 7788********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.76 | 67 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0033 | 67 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 70 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 70 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-6 | 71 | 91 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-7 | 106 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.934 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.023 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 107 | 136 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 109 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 174 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.211 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-12 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-10 | 177 | 202 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MPANNFGISY KHEDEENYSN HWPRFITSGQ KCGINSNAEY QAFKRPKMMN SKMGLEDNRS 60 NVAMTVGPQP PCLQFKRWGS CSYGDECRYA HITGPLKGIR VEDQRNLSKV KSCHFFGSGK 120 ECPYGNKCHF LHERNQKPEG GVGFCRISSA ISIATIGREV RNNTSSDAVD LRIKLLKTRF 180 CINWERTGTC AYGSKCQFAH GKAVDELLLD ANYKDGHVLR VYVQTCHGHS CLSSKTADSW 240 IFQYTGVVGK RWHLCSSQKC SIRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620361.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 42-like isoform X2 | ||||
Refseq | XP_016459039.1 | 0.0 | PREDICTED: uncharacterized protein LOC107782654 isoform X2 | ||||
TrEMBL | A0A1S3Z3N6 | 0.0 | A0A1S3Z3N6_TOBAC; uncharacterized protein LOC107782654 isoform X2 | ||||
STRING | XP_009620360.1 | 1e-153 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 8e-17 | C3H family protein |