PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009620293.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 369aa    MW: 39758.6 Da    PI: 9.197
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009620293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.38.1e-36691742107
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                     ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++  +++ +  +  s  ++++++++
  XP_009620293.1  69 TPRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVKWLLEHAEQAIIEATGTGTVPAIAVsVNGTLKIPTT-SPLSNRENDEN 162
                     6899************************************************************8888844421111111111.11112222222 PP

             TCP  96 kskksqksaasa 107
                     +++k++++++++
  XP_009620293.1 163 SPQKRRRKSSTN 174
                     333333333323 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-3074167IPR005333Transcription factor, TCP
PROSITE profilePS5136925.59275129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSNFHDPDDE CGTSELSNGA GGDPNDQKMD SNEFSDEKKV VLSALKKEPF DSDHHTLVPE  60
IPMPVATTTP RRSSTKDRHT KVEGRGRRIR IPATCAARIF QLTRELGHKS DGETVKWLLE  120
HAEQAIIEAT GTGTVPAIAV SVNGTLKIPT TSPLSNREND ENSPQKRRRK SSTNSEFIDM  180
GCLNKNAANV SQFAPVTTTP VTIASGVPPP QGLIPVWAVS NGGVMVPSNA IWMIPATPPL  240
NVTNNNNNNI NNNSIMQYPQ LWTITPSMTQ VFNLAAATRS ISSFAAATAA NIKSPSPMMV  300
AGPLSTEPKV GSNKSSMAPA SLSSSTGNRN NNNNDVKAHK LRDFSLEIYD RKELQFMGRS  360
GNQVASSKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620293.10.0PREDICTED: transcription factor TCP9-like
TrEMBLA0A1S3YX440.0A0A1S3YX44_TOBAC; transcription factor TCP9-like
STRINGXP_009620293.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137311112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-58TCP family protein