PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009619856.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 35973.3 Da PI: 8.3009 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g XP_009619856.1 60 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 109 59****999.**********954...5999*******************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.339 | 60 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 60 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.13E-21 | 60 | 119 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-11 | 60 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 60 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MNTSPNAQNL IPSQTVPIPS EEKTTTISSA TVSDTTSTST SSNSNKKGKG KGGPDNNKFR 60 YRGVRQRSWG KWVAEIREPR KRTRRWLGTF ATAEDAARAY DRAAIILYGS RAQLNLQPST 120 GNNSSSSSQS SKKSSSSSST QTLRPLLPRP SGFGFTSLSS PNTAPPVSNS VGAGCGYVPY 180 GFFPAVQYSQ QLVQPHHHHH QQQQQQYAIC DGYGPEADNL AHEAGTTCSY SSPNPNPSHI 240 QEKPPKQEDQ SSHEYQNQQQ NRLSDETINP FVGSSMSVCS TQTMAAPVVS DPVAVMGGPG 300 SPVFWPTNDD SNYPAVNFWD YSYDSFLFDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-18 | 61 | 116 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00674 | SELEX | Transfer from GRMZM2G093595 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619856.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | A0A314L7U6 | 1e-175 | A0A314L7U6_NICAT; Ethylene-responsive transcription factor abi4 | ||||
STRING | XP_009619856.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 1e-27 | ERF family protein |