PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009619412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 25961.2 Da PI: 8.8645 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.9 | 9e-35 | 9 | 104 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC+++Cvlapyfpae++++f++vhk+FG+sn++k++k+l+e++ r++a++sl++eA +r++dPv G +g ++++ ++l+ k++ XP_009619412.1 9 ACASCKHQRKKCTEKCVLAPYFPAEKSREFKAVHKVFGVSNITKIVKNLKEDHdRRKAVESLIWEAFCRQKDPVFGPYGEYKRIYEELKLYKSQY 103 7************************************************66555**********************************9999887 PP DUF260 95 a 95 + XP_009619412.1 104 E 104 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.282 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-33 | 9 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MQKTSGTAAC ASCKHQRKKC TEKCVLAPYF PAEKSREFKA VHKVFGVSNI TKIVKNLKED 60 HDRRKAVESL IWEAFCRQKD PVFGPYGEYK RIYEELKLYK SQYEQILQMP ISQGSNNNGM 120 AYETTAQGLI NGWNINKRNE NNLLYINENS TVESWSSYNN KNNPLHHHVQ NIEKLRTENN 180 NGSIVIVPQP QAYNEFNQQY FLAGQYNPID FKSRESMLWE DHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-22 | 4 | 87 | 5 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-22 | 4 | 87 | 5 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619412.1 | 1e-168 | PREDICTED: LOB domain-containing protein 2 | ||||
TrEMBL | A0A1S4ARL9 | 1e-165 | A0A1S4ARL9_TOBAC; LOB domain-containing protein 2-like | ||||
STRING | XP_009619412.1 | 1e-167 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10177 | 18 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 9e-44 | LOB domain-containing protein 2 |