PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009619050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 776aa MW: 84411.6 Da PI: 6.9794 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 359 | 378 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr++++ G C+ G++CkF+H+ XP_009619050.1 359 CRHYLK-GRCSEGEKCKFSHD 378 ******.*************7 PP | |||||||
2 | zf-CCCH | 21.8 | 3.3e-07 | 412 | 432 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a +G+C++G+ C F+H XP_009619050.1 412 PCNNYASNGFCSRGADCLFSH 432 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.507 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 354 | 378 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 354 | 379 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-4 | 358 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 358 | 379 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.615 | 382 | 406 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0027 | 382 | 408 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.925 | 407 | 435 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.041 | 410 | 434 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-5 | 412 | 432 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 412 | 433 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 776 aa Download sequence Send to blast |
MEVDLDLSNR TSDAIQGDKG HARTNDIDDM NRLADKTHSF NDQMVEEPGN RCSTHESEVK 60 ESDPVGPVEL DKELSIDDVC AAIESCFGAD TVAELSQPAE VSGEEIPVPE TRLTEEMEHG 120 LRLKEMELET LISSAGATDL SVHVPMSKEI EEGEVSGDFM VFDESDYDIV NDVRDEKKVE 180 AEKYPADIVD LEDFAFDARD NPPQKRDAYA SSSIDAVDED YTSLGGKFIR KFGEEPKDNV 240 EKVFCSKDVE TRKVCVYDSI LDSGNVAKQV GGDMKLEHLA GFQFGATSAE KAKENKHLID 300 AAEDADIGKK KKKRGPLTKE KRAKKKAKER IKRAEKNRKL GVKRLKLPPV VKPKVVTYCR 360 HYLKGRCSEG EKCKFSHDTT PLTKSKPCCH FARQSCMKGD DCPFDHQLSK YPCNNYASNG 420 FCSRGADCLF SHEITVKIAA VTSPTASNLE LMSPSAPSNS NSLMQINTYG VLHKDVNSSS 480 GSAGLVPGKR TDRTVLEPVQ KPASCTPKGV TFLSHGKSMQ GDARKHEKAG LSSKADDVGK 540 LSCQMIHSKS NNVQKPNGLM KGVSTRTPQG INFLSFGQAT SAEPSGGDTY SGLFNMDYGV 600 KKLLPGGMNN SKEAATCAKR DGSVKDDNQA NLSASLWSMN QMSTRTPHAS APRGISFLSA 660 EKAAQDISRP NEFNRASSPI QRRPSAAEKT SDEMPFRQSS SLFPAGQTLN QSAQKCSVGI 720 ASSSKTPFLA NTQPSSIQKA LQSTLAFAAK FDLGVKFGTS NGSTNITSSI NHSKDR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 328 | KRAKKKAKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619050.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Refseq | XP_009619051.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Refseq | XP_009619052.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
TrEMBL | A0A1S4B844 | 0.0 | A0A1S4B844_TOBAC; zinc finger CCCH domain-containing protein 65-like isoform X3 | ||||
STRING | XP_009619048.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.2 | 3e-06 | C3H family protein |