PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009618595.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 457aa MW: 50157.8 Da PI: 5.1789

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009618595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.2	4.5e-11	387	432	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L A +YIk+L+ XP_009618595.1 387 SIAERVRRTRISDRMRKLQDLVPNM----DKQTNTADMLDFAADYIKELE 432 689*******************7....688*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.488	381	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-15	384	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.21E-11	385	436	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-14	386	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-12	387	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-8	387	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPTAVVS GGGNCGYARD DFDQLLNSRA 60 SNTDDVKQVF DRFVANIDPQ DSNPNNGLIG DTQQIQQNHM SNMNVRSEGV APTKQEHEQS 120 QARQSQNSQF IAAVKQETQQ NSDYSLASQM NYQTQAQQND NSDLTSAMDN FARFLGAADS 180 NRLNQTKMDG GFGAGSSNSN LTRYNSSPAG FFAQFDIENE YGAMRGIGGY GAGGNAAAEA 240 SFPTPNRFSS QTALQSGQPP SSGLLAPISV FGAKSIEEGR AGDESFGKGH KNDESYMTVF 300 PMPSWDDSQM LTDDFLQVPE DNEAEPFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL 360 SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISDR MRKLQDLVPN MDKQTNTADM 420 LDFAADYIKE LETQVKALSE RRSKCTCSNK IEDHIQK

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPTAVVS GGGNCGYARD DFDQLLNSRA  60
SNTDDVKQVF DRFVANIDPQ DSNPNNGLIG DTQQIQQNHM SNMNVRSEGV APTKQEHEQS  120
QARQSQNSQF IAAVKQETQQ NSDYSLASQM NYQTQAQQND NSDLTSAMDN FARFLGAADS  180
NRLNQTKMDG GFGAGSSNSN LTRYNSSPAG FFAQFDIENE YGAMRGIGGY GAGGNAAAEA  240
SFPTPNRFSS QTALQSGQPP SSGLLAPISV FGAKSIEEGR AGDESFGKGH KNDESYMTVF  300
PMPSWDDSQM LTDDFLQVPE DNEAEPFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL  360
SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISDR MRKLQDLVPN MDKQTNTADM  420
LDFAADYIKE LETQVKALSE RRSKCTCSNK IEDHIQK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	1e-110	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618594.1	0.0	PREDICTED: transcription factor bHLH122-like
Refseq	XP_009618595.1	0.0	PREDICTED: transcription factor bHLH122-like
TrEMBL	A0A1S3X0U3	0.0	A0A1S3X0U3_TOBAC; transcription factor bHLH122-like
STRING	XP_009618593.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	1e-51	bHLH family protein