PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009618082.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 236aa    MW: 26025.9 Da    PI: 9.5633
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009618082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.4e-20154188135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009618082.1 154 CQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRL 188
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-16148202IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.899148184IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.0E-15151186IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.75E-15151212No hitNo description
CDDcd002027.75E-14153202No hitNo description
PROSITE patternPS003440154179IPR000679Zinc finger, GATA-type
PfamPF003201.8E-17154188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MHLLCVTCLK PIGSTNSNTY WECVEEELEW LSNKDAFPAV EFGILADNPS IVFDHHSPVS  60
VLENSSSTCN SSGNGSANAN AYMSCCASLK VPVNYPVRAR SKRRRRRRRG SFADLPSEHC  120
MLVNKPSFKI VKQREPLLSL PMNSAKSACI GRRCQHCGAD KTPQWRAGPL GPKTLCNACG  180
VRYKSGRLLP EYRPANSPTF SPTVHSNSHR KVLEMRKQKI GVGGMMIHEA CGYSVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199108RSKRRRRRRR
2101106KRRRRR
3102108RRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076900.0AB107690.1 Nicotiana tabacum AGP2 mRNA for AG-motif binding protein-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618082.11e-176PREDICTED: GATA transcription factor 1-like isoform X2
RefseqXP_016444156.11e-176PREDICTED: GATA transcription factor 1-like isoform X2
TrEMBLA0A1S3XW401e-175A0A1S3XW40_TOBAC; GATA transcription factor 1-like isoform X2
STRINGXP_009618081.11e-160(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-46GATA transcription factor 1