PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009617267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 295aa MW: 33489.4 Da PI: 10.5413 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.2 | 7e-39 | 82 | 231 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesss 79 ++k+ r ski T++g+RdRRvRls+ +a++fFdLq+ LGfdk+skt++WL++++k ai el++ ++++a++c ++ + XP_009617267.1 82 PKKRERFSKILTSQGPRDRRVRLSIAIARKFFDLQEILGFDKPSKTLDWLFTNSKLAIEELANWsthqdhhpkiagatkssCNETAKDCASQCED 176 68999**********************************************************96666666555544333322222333222222 PP TCP 80 ssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 + +++ ++++++ ak+kk+ k++a+ l l + esrakarararert +km + XP_009617267.1 177 LAITTNEGSERKPKRAKEKKEVKDEATDLVLVArESRAKARARARERTIKKMWSR 231 2222333335556666888888888888888888*****************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.82 | 82 | 142 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.1E-37 | 83 | 229 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 10.869 | 210 | 227 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MFPASNSTGN PPPHPSLSFH SSSPFLGLNG NQILLHHYQN QLSSHHFAKN MTLSANNIIN 60 SPKYHQNHSD NSLRSFPINK KPKKRERFSK ILTSQGPRDR RVRLSIAIAR KFFDLQEILG 120 FDKPSKTLDW LFTNSKLAIE ELANWSTHQD HHPKIAGATK SSCNETAKDC ASQCEDLAIT 180 TNEGSERKPK RAKEKKEVKD EATDLVLVAR ESRAKARARA RERTIKKMWS RIETSQRSTS 240 QLIRSSFHPN FSAPIESSTT YYGSSSFNTE NLDKGTTSEL QGRWKQWDSS HSNQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009617266.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
Refseq | XP_009617267.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A1S3Y4H5 | 0.0 | A0A1S3Y4H5_TOBAC; transcription factor CYCLOIDEA-like | ||||
STRING | XP_009617266.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-23 | TCP domain protein 12 |