PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009617148.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 344aa    MW: 38817 Da    PI: 6.4273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009617148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13165211354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h e+Er RR+++N++f  Lr+++P        K++Ka+ L  Av YIk+L
  XP_009617148.1 165 MNHVEAERIRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYIKEL 211
                     589************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-20181IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.901162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-18162232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-13165216No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-15168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPQCFVAEDE LVVQAYSSAT QVWLASHYEL QLYNCERAKE ADLHGIRTLV CIATPSGVVE  60
LGSSDVIQEN WEFLQLIKSL FGSNNYNITS HLPINQVPLR DHQKERGGSP QQVPDKRKQE  120
MITETAEFEN SDFDNESSAI NNINRSRKRK AGSSSIIIGR SEMAMNHVEA ERIRREKLNH  180
RFYALRSVVP YVSKMDKASL LADAVTYIKE LKVKVEDLES KIQSQKPKNN IIEQHDSHSA  240
SSSVFNPANN KSFSSCNGGR NGMEIEVKII GTEAIIRVQS LDVNFPCARL MNVFREMEFQ  300
IYHASVSSVK DLMLQDIVIR VPDEYSNKEA LKSAIMTSLC GIDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-21158220162Transcription factor MYC2
5gnj_B5e-21158220162Transcription factor MYC2
5gnj_E5e-21158220162Transcription factor MYC2
5gnj_F5e-21158220162Transcription factor MYC2
5gnj_G5e-21158220162Transcription factor MYC2
5gnj_I5e-21158220162Transcription factor MYC2
5gnj_M5e-21158220162Transcription factor MYC2
5gnj_N5e-21158220162Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617148.20.0PREDICTED: transcription factor MYC4-like
TrEMBLA0A1S3YPA90.0A0A1S3YPA9_TOBAC; transcription factor MYC4-like
STRINGXP_009617148.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-59bHLH family protein