PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616996.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 856aa MW: 96921.8 Da PI: 6.7888

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.9	2.5e-16	65	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+++YA++vGFs+ + + ++ k +g i++ ++ Cs+e r+++ ++ C+a+l++++++++ w+vtk++++HnH+++ XP_009616996.1 65 NFFDAYARHVGFSIHVGQYSRAKPDGPIISWDYSCSREVVRRKNIES--------------CNAMLRIERKNSDSWVVTKFVEDHNHSIV 140 69*************************************998877..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-13	65	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-30	275	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.115	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-10	552	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-8	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MNIEVIDVEG QKRQKTGEIA AELNHNFKQG LPENFTERDA IVEFDDGEEK PYVGMEFQTE 60 EAAKNFFDAY ARHVGFSIHV GQYSRAKPDG PIISWDYSCS REVVRRKNIE SCNAMLRIER 120 KNSDSWVVTK FVEDHNHSIV NPSKVHYLRP CKHFAGASKT VGETPGAPTV VMVPVDGNHV 180 SVSSNEGVKD ASPVESNRVT KNFSPVIPIM FIQPCSRKRT LGRDAHNLLD YFKKMQAENP 240 GFYYAIQLDD ENRMTNAFWA DARSRIAYSH FGDAVIFDTM YRPNQFQVPF APFTGVNHHG 300 QIVLFGCALL LDESESSFTW LFRTWLSAMN NRPPVSITTD QDRAIKAAVN QVLPGTRHCI 360 CKWHILREGQ ERLAHIYMAH PSFYGKLYSC INYSETIEDF ELSWASILDR YGLRKNEWLQ 420 AVYNARNQWA PVYFRDTFFA ALPSNQGVTS FFDGYVNQQT TLPMFFKQYE RALESSLERE 480 IQSDFDTNCT TPMLKTPSPM EQQASNLYTK KVFAKFQEEL VETFAYTANK IDGDERLSKF 540 RVAKYEQDDK AYIVMLNLAE MKASCSCHMF EYSGILCRHI LTVFTVTNVL TVPSHYILRR 600 WTRNAKVGQG SEEDIVKQGI NSLSSRFNHL CLEALRYAEE GAVSVETYDA AISALRDGLS 660 KISIVAKNII RPPSSQGSGS TQDESIKRTL ATSDTAPSLW PWQDTMPRHF NLNDVGLPAG 720 DLNQPTMTPV AINRDGGLAD NVVVYTCFKS MTWVIENTTP ASKVAVINLK LQDYGKSPAG 780 ETEVQFRVTR VTLEPMLKSM GYISQQLSLP ANRVAVINLK LQDTKTPSGE TEVKFQVSTD 840 TLGSMLRSMA YIREQL

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MNIEVIDVEG QKRQKTGEIA AELNHNFKQG LPENFTERDA IVEFDDGEEK PYVGMEFQTE  60
EAAKNFFDAY ARHVGFSIHV GQYSRAKPDG PIISWDYSCS REVVRRKNIE SCNAMLRIER  120
KNSDSWVVTK FVEDHNHSIV NPSKVHYLRP CKHFAGASKT VGETPGAPTV VMVPVDGNHV  180
SVSSNEGVKD ASPVESNRVT KNFSPVIPIM FIQPCSRKRT LGRDAHNLLD YFKKMQAENP  240
GFYYAIQLDD ENRMTNAFWA DARSRIAYSH FGDAVIFDTM YRPNQFQVPF APFTGVNHHG  300
QIVLFGCALL LDESESSFTW LFRTWLSAMN NRPPVSITTD QDRAIKAAVN QVLPGTRHCI  360
CKWHILREGQ ERLAHIYMAH PSFYGKLYSC INYSETIEDF ELSWASILDR YGLRKNEWLQ  420
AVYNARNQWA PVYFRDTFFA ALPSNQGVTS FFDGYVNQQT TLPMFFKQYE RALESSLERE  480
IQSDFDTNCT TPMLKTPSPM EQQASNLYTK KVFAKFQEEL VETFAYTANK IDGDERLSKF  540
RVAKYEQDDK AYIVMLNLAE MKASCSCHMF EYSGILCRHI LTVFTVTNVL TVPSHYILRR  600
WTRNAKVGQG SEEDIVKQGI NSLSSRFNHL CLEALRYAEE GAVSVETYDA AISALRDGLS  660
KISIVAKNII RPPSSQGSGS TQDESIKRTL ATSDTAPSLW PWQDTMPRHF NLNDVGLPAG  720
DLNQPTMTPV AINRDGGLAD NVVVYTCFKS MTWVIENTTP ASKVAVINLK LQDYGKSPAG  780
ETEVQFRVTR VTLEPMLKSM GYISQQLSLP ANRVAVINLK LQDTKTPSGE TEVKFQVSTD  840
TLGSMLRSMA YIREQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616992.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009616993.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009616995.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009616996.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009616997.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009616998.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_009616999.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_018630840.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S4BG32	0.0	A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_009616992.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]