PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 365aa MW: 41223.7 Da PI: 5.401 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 5.9e-30 | 142 | 202 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs++dp+++eitY+g+H+++ XP_009613243.1 142 DDGYSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPTLFEITYKGSHTCN 202 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-29 | 135 | 203 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 140 | 203 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-40 | 141 | 203 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.494 | 142 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-27 | 142 | 201 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDCGFNWEYN SLINELTQGM GHAKQLRAYF SSAASSCSSN KIQELHLHMQ MILSSFENSL 60 SILKWTGSIT QTPQLVVAPP ISNVALESSF SVDESPKTVD LNGNFKENDQ DLRYVSKKRK 120 QLPTWTEQVR VSAENGFEGP TDDGYSWRKY GQKDILGAKY PRSYYRCTYR LMQNCWATKQ 180 VQRSDDDPTL FEITYKGSHT CNQAFNSAAQ PTSPEKYEFK KQANNPKIVQ SNQMLANLQA 240 NLRVNTNDLD KKETTCSFPF SPTFSGFVDE NLHFQVSQVN DNLVGGYSPS FISPTTPESS 300 YFSLPSCQMN GSQRIHSLHN SESDLPDLFS ANTSSTSSPI VGLEFPLEHV ELDPNFPFDN 360 SEFFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-19 | 142 | 201 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | LRYVSKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613243.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
Refseq | XP_018629757.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | A0A1S4C5W4 | 0.0 | A0A1S4C5W4_TOBAC; probable WRKY transcription factor 53 | ||||
STRING | XP_009613243.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-62 | WRKY family protein |