PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009613235.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 113aa    MW: 13238.9 Da    PI: 5.7037
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009613235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-20291081599
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      l++p +f++++ ++   + t +l+ +sg+ W++kl  r   ++ ++ ++GW++F+++++L+egDf++F++dg+ +f  +v++f+k
  XP_009613235.1  29 ELRIPPEFVKHITEE--ATETTILKGPSGKHWNMKL--REDEEGlFFNAGGWNKFAREQQLEEGDFLLFQYDGNITF--HVRIFNK 108
                     488******777644..4458999************..888888677789*********************997777..9**9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-2312109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2413110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.29815109IPR003340B3 DNA binding domain
CDDcd100176.33E-1716107No hitNo description
SMARTSM010192.5E-1618109IPR003340B3 DNA binding domain
PfamPF023621.2E-1729108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MVRKSSSSSI PRDDSPCFYK VIFDPRVEEL RIPPEFVKHI TEEATETTIL KGPSGKHWNM  60
KLREDEEGLF FNAGGWNKFA REQQLEEGDF LLFQYDGNIT FHVRIFNKNG LER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613235.14e-80PREDICTED: B3 domain-containing protein Os01g0723500-like
RefseqXP_016501188.14e-80PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1S4CJ439e-79A0A1S4CJ43_TOBAC; B3 domain-containing protein Os01g0723500-like
STRINGXP_009613235.12e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-16B3 family protein