PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 181aa MW: 20656.5 Da PI: 9.5245 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.2 | 2.4e-27 | 31 | 117 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +YneYA +GFsvrk++ +k+k +g +t+r+f+C keg+r+++k++ ++ +++r+etrtgC a ++++++++gk+++t+++++HnH+l XP_009613198.1 31 CYNEYAAAIGFSVRKEYANKNKVQGYVTSRKFTCHKEGYRSKDKRD-QTVQKHRKETRTGCLAYIVISRQSNGKFRITSFDEKHNHPL 117 7******************************************999.99999**********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-24 | 31 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEISSCESQG GFNVPIKLGM EFDSDEHAYE CYNEYAAAIG FSVRKEYANK NKVQGYVTSR 60 KFTCHKEGYR SKDKRDQTVQ KHRKETRTGC LAYIVISRQS NGKFRITSFD EKHNHPLPSS 120 LSHMLPSQRK INVAQAHEVT ARMFHFMIKQ VFSMLIVATS HKVGEVCYPL PSPDSEKAKV 180 S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613198.1 | 1e-135 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X3 | ||||
TrEMBL | A0A1S4B8Y8 | 4e-98 | A0A1S4B8Y8_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
TrEMBL | A0A1S4B924 | 4e-98 | A0A1S4B924_TOBAC; protein FAR1-RELATED SEQUENCE 7-like isoform X3 | ||||
STRING | XP_009613191.1 | 1e-102 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 5e-19 | FAR1 family protein |