PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 28757.3 Da PI: 4.7547 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.8 | 4.2e-39 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC+++Cvlapyfp++qpk f+n+h+lFG+ n++k+lk+l++++ + dam+s+++eA+++ r PvyG+v+ i +l+qql+ + +el XP_009612871.1 10 ACAACKYQRRKCSSECVLAPYFPSNQPKMFQNAHRLFGVCNIMKILKQLDDDDqKADAMKSIIFEADMWERFPVYGCVEYIYHLRQQLQFALEEL 104 7************************************************655549**************************************** PP DUF260 95 allkee 100 +++ ++ XP_009612871.1 105 HYVYAQ 110 998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.537 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPSNQPKMFQ NAHRLFGVCN IMKILKQLDD 60 DDQKADAMKS IIFEADMWER FPVYGCVEYI YHLRQQLQFA LEELHYVYAQ LALYREQQQQ 120 QLALECGVTS EIPFVNGLSV GPFFTSEGGP KTNLMGSDSI FDHNNSIAFP ASDHAIFGFG 180 VRDDQRDISH EYECLINPFN NIMADDRQSY VETKEACDSS SESSWKDTQS LENLSQNELR 240 NAAACFSLTS RVTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 2 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 2 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612871.1 | 0.0 | PREDICTED: LOB domain-containing protein 11-like | ||||
TrEMBL | A0A1S3X592 | 0.0 | A0A1S3X592_TOBAC; LOB domain-containing protein 2-like | ||||
STRING | XP_009612871.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 8e-29 | LOB domain-containing protein 27 |