PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 29045 Da PI: 8.0966 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.3 | 1.1e-16 | 35 | 124 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++vF+l + + l+v XP_009612765.1 35 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQLFRFCR--LKVY 121 89*********************8884..35678****************555555....9**********************865233..4777 PP EE- CS B3 96 vfr 98 ++r XP_009612765.1 122 IVR 124 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 27 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-22 | 28 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-24 | 33 | 124 | No hit | No description |
Pfam | PF02362 | 8.2E-15 | 35 | 125 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.055 | 35 | 126 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-19 | 35 | 126 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAMMQNLYGR FDLASSAKYR AEEVQSRLST KYPSFMKPMI RSNVTAGFWL SLPRFFCQLH 60 LPRHDTTVTL VDESQEEYKT KYLAERNGLS GGWRGFSLAH NLVEGDVLVF QLFRFCRLKV 120 YIVRANYLAE VDAALVLLHL DAHQKQIDPV HQMQDNRSTK QAGIKRQRFS SQREEDDYSA 180 EENMLHKHSH PRITFKDLDL PSKGLTYETL SIVDAVKASK INDPSSWNTR PTELEQLEIR 240 YFSCGYSIEP A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 4e-60 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 4e-60 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612765.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X2 | ||||
Swissprot | Q1G3M3 | 1e-41 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A1S4AGD5 | 0.0 | A0A1S4AGD5_TOBAC; B3 domain-containing protein At5g42700-like isoform X2 | ||||
STRING | XP_009612764.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-43 | B3 family protein |
Publications ? help Back to Top | |||
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